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@ARTICLE{Agrafiotis2003,
  author = {D. K. Agrafiotis},
  title = {Stochastic Proximity Embedding},
  journal = {Computational Chemistry},
  year = {2003},
  volume = {24},
  owner = {safa},
  timestamp = {2012.11.03}
}

@CONFERENCE{AlbertD.Shieh2011,
  author = {Albert D. Shieh, Tatsunori B. Hashimoto and Edoardo M. Airoldi},
  title = {Tree Preserving Embedding},
  booktitle = {Proceedings of the 28th International Conference on Machine Learning,
	Bellevue, WA, USA},
  year = {2011},
  owner = {safa},
  timestamp = {2012.11.02}
}

@ARTICLE{AliCivril2006,
  author = {Ali Civril, Malik Magdon-Ismail and Eli Bocek-Rivele},
  title = {SDE: Graph Drawing Using Spectral Distance Embedding},
  journal = {Lecture Notes in Computer Science},
  year = {2006},
  volume = {3843},
  pages = {512-513},
  owner = {safa},
  timestamp = {2012.11.02}
}

@ARTICLE{Chen2009,
  author = {Lisha Chen and Andreas Buja},
  title = {Local Multidimensional Scaling For Nonlinear Dimension Reduction,
	Graph Drawing, And Proximity Analysis},
  journal = {Journal of the American Statistical Association},
  year = {2009},
  volume = {104},
  pages = {209-219},
  owner = {Safa},
  timestamp = {2013.04.05}
}

@ARTICLE{ColinWare2002,
  author = {Colin Ware, Helen Purchase, Linda Colpoys and Matthew McGill},
  title = {Cognitive measurements of graph aesthetics},
  journal = {Information Visualization},
  year = {2002},
  volume = {1},
  pages = {103--110},
  owner = {safa},
  timestamp = {2012.11.15}
}

@ARTICLE{Demartines1997,
  author = {P. Demartines and J. H´erault},
  title = {Curvilinear Component Analysis: A self-organizing neural network
	for nonlinear mapping of data sets},
  journal = {IEEE Transaction on Neural Networks},
  year = {1997},
  volume = {8},
  pages = {148-154},
  owner = {safa},
  timestamp = {2012.11.03}
}

@ARTICLE{Eades2000,
  author = {P. Eades and M.L. Huang},
  title = {Navigating Clustered Graphs using Force-Directed Methods},
  journal = {Graph Algorithms and Applications},
  year = {2000},
  volume = {4},
  pages = {183-210},
  owner = {safa},
  timestamp = {2012.11.02}
}

@ARTICLE{Harel2004,
  author = {David Harel and Yehuda Koren},
  title = {Graph Drawing by High-Dimensional Embedding},
  journal = {Graph Algorithms and Applications},
  year = {2004},
  volume = {8},
  pages = {195-214},
  owner = {safa},
  timestamp = {2012.11.02}
}

@ARTICLE{Harel2002,
  author = {David Harel and Yehuda Koren},
  title = {Graph drawing by high-dimensional embedding},
  journal = {GraphDrawing},
  year = {2002},
  pages = {207–219},
  owner = {safa},
  timestamp = {2012.11.02}
}

@ARTICLE{Hu2006,
  author = {Yifan Hu},
  title = {Efficient, High-Quality Force-Directed Graph Drawing},
  journal = {The Mathematica Journal},
  year = {2006},
  volume = {10},
  pages = {37-71},
  owner = {safa},
  timestamp = {2012.11.02}
}

@ARTICLE{JohnAldoLee2004,
  author = {John Aldo Lee, Amaury Lendasse , Michel Verleysen},
  title = {Nonlinear projection with curvilinear distances: Isomap versus curvilinear
	distance analysis},
  journal = {Neurocomputing},
  year = {2004},
  volume = {57},
  pages = {49-76},
  owner = {safa},
  timestamp = {2012.11.03}
}

@BOOK{Jolliffe2002,
  title = {Principal Component Analysis},
  publisher = {New York: Springer-Verlag},
  year = {2002},
  author = {I. T. Jolliffe},
  owner = {safa},
  timestamp = {2012.11.03}
}

@ARTICLE{JOSEPD'IAZ2002,
  author = {JOSEP D'IAZ, JORDI PETIT AND MARIA SERNA},
  title = {A Survey of Graph Layout Problems},
  journal = {ACM Computing Surveys},
  year = {2002},
  volume = {34},
  pages = {313-356},
  owner = {safa},
  timestamp = {2012.11.02}
}

@ARTICLE{KerstinBunte2012,
  author = {Kerstin Bunte, Sven Haase, Michael Biehl and Thomas Villmann},
  title = {Stochastic neighbor embedding (SNE) for dimension reduction and visualization
	using arbitrary divergences},
  journal = {Neurocomputing},
  year = {2012},
  volume = {90},
  pages = {23-45},
  owner = {safa},
  timestamp = {2012.11.03}
}

@ARTICLE{Koren2003,
  author = {Yehuda Koren},
  title = {On spectral graph drawing},
  journal = {COCOON},
  year = {2003},
  pages = {496–508},
  owner = {safa},
  timestamp = {2012.11.02}
}

@ARTICLE{Lang2005,
  author = {Kevin Lang},
  title = {Fixing two weaknesses of the Spectral Method},
  journal = {In Advances in Neural Information Processing Systems 18 (2006) Key:
	citeulike:6212218},
  year = {2005},
  volume = {18},
  owner = {safa},
  timestamp = {2012.11.02}
}

@ARTICLE{Li2004,
  author = {James Xinzhi Li},
  title = {Visualization of high-dimensional data with
	
	relational perspective map},
  journal = {Information Visualization},
  year = {2004},
  volume = {3},
  pages = {49-59},
  owner = {safa},
  timestamp = {2012.11.09}
}

@ARTICLE{Mignotte2012,
  author = {Max Mignotte},
  title = {A Bicriteria Optimization Approach Based Dimensionality Reduction
	Model for the Color Display of Hyperspectral Images},
  journal = {IEEE Transactions on Geoscience and Remote Sensing},
  year = {2012},
  volume = {50},
  pages = {501-513},
  owner = {Safa},
  timestamp = {2013.09.15}
}

@ARTICLE{P.Gajer2004,
  author = {P. Gajer, M.T. Goodrich, and S.G. Kobourov},
  title = {A multi-dimensional approach to forcedirected layouts of large graphs},
  journal = {Computational Geometry: Theory and Applications},
  year = {2004},
  volume = {29},
  pages = {3-18},
  owner = {safa},
  timestamp = {2012.11.02}
}

@ARTICLE{Purchase2002,
  author = {Helen C. Purchase},
  title = {Metrics for Graph Drawing Aesthetics},
  journal = {Visual Languages and Computing},
  year = {2002},
  volume = {13},
  pages = {501-516},
  owner = {safa},
  timestamp = {2012.11.15}
}

@CONFERENCE{R.Bourqui2007,
  author = {R. Bourqui, D. Auber and P. Mary},
  title = {How to draw clustered weighted graphs using a multilevel force-directed
	graph drawing algorithm},
  booktitle = {In Proc. of the 11 Int. Conf. on Information Visualisation (IV'07),
	pages 757-764, Washington, USA.},
  year = {2007},
  owner = {safa},
  timestamp = {2012.11.02}
}

@ARTICLE{SamuelKaski2003,
  author = {Samuel Kaski, Janne Nikkilä, Merja Oja, Jarkko Venna, Petri Törönen
	and Eero Castrén},
  title = {Trustworthiness and metrics in visualizing similarity of gene expression},
  journal = {BMC Bioinformatics 4: 48 (2003)},
  year = {2003},
  pages = {4:48},
  owner = {safa},
  timestamp = {2012.11.03}
}

@ARTICLE{TimDwyer2007,
  author = {Tim Dwyer, Kim Marriott and Michael Wybrow},
  title = {Integrating Edge Routing into Force-Directed Layout},
  journal = {Lecture Notes in Computer Science},
  year = {2007},
  volume = {4372},
  pages = {8-19},
  owner = {safa},
  timestamp = {2012.11.02}
}

@ARTICLE{V.DeSilva2003,
  author = {V. De Silva, J.B. Tenenbaum},
  title = {Global versus local methods in nonlinear dimensionality reduction},
  journal = {Advances in Neural Information Processing Systems},
  year = {2003},
  volume = {15},
  pages = {705-712},
  owner = {safa},
  timestamp = {2012.11.03}
}

@ARTICLE{V.Onclinx2009,
  author = {V. Onclinx, V.Wertz and M.Verleysen},
  title = {Nonlinear data projection on non-Euclidean manifolds with controlled
	trade-off between trustworthiness and continuity},
  journal = {Neurocomputing},
  year = {2009},
  volume = {72},
  pages = {1444–1454},
  owner = {safa},
  timestamp = {2012.11.03}
}

@ARTICLE{V.Onclinx2009a,
  author = {V. Onclinx , V.Wertz , and M.Verleysen},
  title = {Nonlinear data projection on non-Euclidean manifolds with controlled
	trade-off between trustworthiness and continuity},
  journal = {Neurocomputing},
  year = {2009},
  volume = {72},
  pages = {1444-1454},
  owner = {safa},
  timestamp = {2012.11.26}
}

@ARTICLE{Venna2007,
  author = {Jarkko Venna and Samuel Kaski},
  title = {Comparison of visualization methods for an atlas of gene expression
	data sets},
  journal = {Information Visualization},
  year = {2007},
  volume = {6},
  pages = {139-154},
  owner = {safa},
  timestamp = {2012.11.05}
}

@BOOK{Junker2008,
  title = {Analysis of Biological Networks},
  publisher = {wiley \& Sons Inc.},
  year = {2008},
  editor = {Bjorn H. Junker and Falk Schreiber},
  owner = {safa},
  timestamp = {2012.11.12}
}

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