Skip to content
IJBR International Journal of Biological Research E-ISSN 2307-9029

Meatproteome of 2, 4-D degradation analysis between agro chemical contaminated soils

Authors and Affiliations

  • Karthika Dakshinamoorthy
  • King Solomon Ebenezer
  • Rajesh Kannan Velu

About this article

Download PDF

Abstract

Bioremediation is a process to remove pollutants from soil by employing microorganism. One of the most major herbicide that contaminates soil is 2, 4-Dichlorophenoxyacetic acid. There are several molecular and proteomics analyses have been used to find out the biological interaction, but metaproteomics is an ideal tool to study the biological interactions between soil and microorganisms in the ecosystem. The present study has focused on to identify the removal of 2, 4-D by soil microbes. The 2, 4-D degrading bacteria from these soil samples were produced chlorocatechol dioxygenases. Here, 2, 4-D enriched soil samples were studied through experimentally with HPLC and metaproteome of soil were analyzed using SDS-PAGE. Based on the study it has revealed that sample 1 and 3 completely degraded but sample 2 was degraded only 80% on significantly. The preliminary reports of the soil bioremediation study have been provided a paradigm for metaproteomic research on soil biology.

References

[1] Ishino, Y., Okada, H., Ikeuchi. M and Taniguchi, H. (2007). Mass spectrometry-based prokaryote gene annotation. Proteomics, 7, 4053–4065.

[2] Tonso N. L., Matheson V.G., Holben W.E., (1995). Polyphasic characterization of a suite of bacterial isolates capable of degrading 2, 4 –D. Microbial Ecol 30: 1-22

[3] Lee T,H., Kurata S., Nakatsu C.,H, Kamagata Y., (2005). Molecular Analysis of Bacterial community Based on 16s rDNA Functional Genes in Activated Sludge Enriched with 2, 4- Dichlorophenoxyacetic acid under Different cultural conditions. Microbio. Ecol 49:151-162.

[4] Amarante junior O, P., Santos T, C., R, Nunes G, S. (2003). Concise revision of methods for determination of the herbicide dichlorophenoxyacetic acid (2, 4-D). Quim nova 26: 223-229.

[5] Bastida F., J. L. Moreno., C. Nicola´ S., T. Hernandez and Garcia C. (2009). Soil metaproteomics: a review of an emerging environmental science. Significance, methodology and perspectives. European Journal of Soil Science, 60, 845–859.

View more references (8)

[6] Ogunseitan, O.A. (2006). Soil proteomics: extraction and analysis of proteins from soil. In: Nucleic Acids and Proteins in Soil, Series:Soil Biology, Volume 8 (eds P. Nannipieri & K. Smalla), 95–115

[7] Carla M.R Lacerda and Kenneth F. Reardon., (2009). Environmental proteomics: Applications of proteome profiling in environmental microbiology and biotechnology. Briefings in Functional Genomics and Proteomics. 1-13.

[8] Ernst, W (1976). Physiological and biochemical aspects of metal tolerance. In Effects of air pollutants on plants .Cambridge University Press, 115–133.

[9] Tapan Adhikari., Ajay Kumar., M. V. Singh., and A. Subba Rao (2010) Phytoaccumulation of Lead by Selected Wetland Plant Species. Communications in Soil Science and Plant Analysis, 41:2623–2632

[10] Maruthi Sankar. R. G.,V. Subramanian, K. L., Sharma., P. K. Mishra ., S. Jyothimani .,K. Bhaskar., D. Jawahar., M. Rajeswari., T. Taghavan., G. Ravindra Chary., A. Renuka Devi., K. A. Gopinath., B. Venkateswarlu and J. Kusuma Grace (2012) Communications in Soil Science and Plant Analysis Volume 43, Issue 5.

[11] Vance ED., Brookes PC and Jenkinson DS (1987) .An extraction method for measuring soil microbial biomass C. Soil Biol. Biochem. 19, 703–707.

[12] Vroumsia T., Steiman R., Seigle-Murandi F., Benoit-Guyod J.L. (2005) .Fungal bioconversion of 2,4-dichlorophenoxyacetic acid (2,4-D) and 2,4 dichlorophenol (2,4- DCP). Chemosphere, 60(10): 1471–1480.

[13] Dirk Benndorf. Gerd U Balcke., Hauke Harmo and Martin Von Bergen., (2007). Functional metaproteome analysis of protein extract from contaminated soil and groundwater 1: 224-234.


How to Cite

Dakshinamoorthy, K., Solomon Ebenezer, K., & Velu, R. K. (2013). Meatproteome of 2, 4-D degradation analysis between agro chemical contaminated soils. International Journal of Biological Research, 1(2), 55-58. https://doi.org/10.14419/ijbr.v1i2.1317